Part:BBa_K4370012:Design

sgRNA_gpm_STREPTO

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  COMPATIBLE WITH RFC[21]
• 23
  COMPATIBLE WITH RFC[23]
• 25
  COMPATIBLE WITH RFC[25]
• 1000
  COMPATIBLE WITH RFC[1000]

Design Notes

This sequence has been designed to target different strains such as S. ambofaciens ATCC 23877, S. bottropensis ATCC 25435, and S. venezuelae ATCC 10712. The part is also designed to be cloned between NcoI (CCATGG) and SnaBI (TACGTA) sites into the pCRISPR-dCas9 plasmid published by Tong and collaborators (ACS Synthetic Biology, 2015). This plasmid encodes a dead version of Cas9 that can be used to silence gene expression at specific loci. Twenty nucl. (TCTGGGCCTTGTCCTTGCCC) are perfect the gpm gene, the following nucleotides (GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGTCGGTGCT) correspond to the gRNA scaffold.

Please have a look to our CRISPRi tuto to learn more about the way to design sgRNA for gene expression silencing in bacteria.

Source

The DNA has been synthetized.

References

Yaojun Tong, Pep Charusanti, Lixin Zhan, Tilmann Weber, and Sang Yup Lee, “CRISPR-Cas9 Based Engineering of Actinomycetal Genomes”, ACS Synth. Biol. 2015, 4, 9, 1020–1029

https://doi.org/10.1021/acssynbio.5b00038

Designed using our CRISPRi tuto.